rpxdock.motif package

Submodules

rpxdock.motif.frames module

rpxdock.motif.frames.add_rots_to_respairdat(rp, rotspace, **kw)

rpxdock.motif.frames.add_xbin_to_respairdat(rp, xbin, **kw)

rpxdock.motif.frames.bb_stubs(n, ca=None, c=None, dtype='f4')

rpxdock.motif.frames.get_pair_keys(rp, xbin, min_pair_score, min_ssep, use_ss_key, **kw)

rpxdock.motif.frames.make_respairdat_subsets(rp)

rpxdock.motif.frames.remove_redundant_pdbs(pdbs, sequence_identity=30)

rpxdock.motif.frames.ss_to_ssid(ss)

rpxdock.motif.frames.stub_from_points(cen, pa=None, pb=None, dtype='f4')

rpxdock.motif.pairdat module

class rpxdock.motif.pairdat.ResPairData(data, sanity_check=None)

Bases: object

only_whats_needed(task)

sanity_check()

split_by_pdb(frac, random=True, **kw)

subset_by_aa(aas, sanity_check=False, return_keepers=False)

subset_by_pair(keepers, sanity_check=False, update_p_res=True)

subset_by_pdb(keep, sanity_check=False, update_p_res=True, **kw)

keep subset of data in same order as original

subset_by_res(keepers, sanity_check=False)

subset_by_ss(ss, sanity_check=False, return_keepers=False)

rpxdock.motif.pairscore module

class rpxdock.motif.pairscore.ResPairScore(xbin, keys, score_map, range_map, res1, res2, rotspace, rp)

Bases: object

add_hier_score(resl, scoremap)

bin_get_all_data(keys)

bin_respairs(key)

bin_score(keys)

hier_score(resl)

class rpxdock.motif.pairscore.Xmap(xbin, phmap, attrs={}, rehash_bincens=False)

Bases: object

has(x_or_k)

key_of(x_or_k)

keys(n=- 1)

xforms(n=- 1)

rpxdock.motif.pairscore.create_res_pair_score(rp, xbin, **kw)

rpxdock.motif.pairscore.create_res_pair_score_map(rp, xbin, min_bin_score, **kw)

rpxdock.motif.rpxgen module

rpxdock.motif.rpxgen.create_xbin_even_nside(cart_resl, ori_resl, max_cart)

rpxdock.motif.rpxgen.make_and_dump_hier_score_tables(pairdat, **kw)

rpxdock.motif.rpxgen.make_hscore_single(pairdat, ihier, xbin_base, cart_extent, ori_extent, sstag, **kw)

Module contents