rpxdock.body package

Submodules

rpxdock.body.body module

class rpxdock.body.body.Body(pdb_or_pose, sym='C1', symaxis=[0, 0, 1], **kw)

Bases: object

clash_ok(*args, **kw)

com()

contact_count(other, maxdis)

contact_pairs(other, maxdis, buf=None, use_bb=False, atomno=False)

copy()

copy_with_sym(sym, symaxis=[0, 0, 1])

copy_xformed(xform)

distance_to(other)

dump_pdb(fname, **kw)

filter_pairs(pairs, score_only_sspair, other=None, lbub=None, sanity_check=True)

init_coords(sym, symaxis, xform=array([[1.0, 0.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]))

intersect(other, xself=None, xother=None, mindis=3.5, **kw)

intersect_range(other, xself=None, xother=None, mindis=3.5, max_trim=100, nasym1=None, debug=False, **kw)

long_axis()

long_axis_z_angle()

move_by(x)

move_to(x)

move_to_center()

positioned_cen(asym=False)

positioned_coord(asym=False)

positioned_coord_atomno(i)

positioned_orig_coords()

radius_max()

radius_xy_max()

rg()

rg_xy()

rg_z()

set_asym_body(pose, sym, **kw)

slide_to(other, dirn, radius=1.75)

str_pdb(**kw)

strip_data()

Module contents