TODO¶
Simple-ish Todos¶
only certain residues
Needed Frameworks¶
Scoring Framework¶
For use in array-ified main docking
filter
trim
score
examples
termini orientation
intra interface
Post doc filter framework¶
For use after main dock, filtering one dock at a time and only a limited number of results. Theses filters can be much more flexible and probably do arbitrary calculations
ss count??? (maybe in filtering if efficient)
Documentation¶
need much much more documentation, both tutorial stuff and module (code comment) docs
Figures to doc and place¶
GM_bvh_1
GM_bvh_2
GM_bvh_3
GM_bvh_4
GM_dock_cyclic
GM_forming_two_interfaces_requires_finer_search
GM_hier_samp_ensemble
GM_hier_search_bench_plugdock
GM_hier_search_ensemble_score
GM_hier_search_grids
GM_hier_search_smear_6D
GM_hier_search_smear_illustration
GM_rpx_bins
GM_rpx_jorge
GM_rpx_smear_cart_only
helix_dhr14_tube_brickwall
helix_from_repeat1
three_helix_outline